As I pulled the tray from the oven, the vibrant red hue of these cookies caught my eye, drawing me in with a comforting familiarity. The moment I took a bite of these rich and fluffy red velvet thumbprint cookies with cream cheese filling, I knew they were destined to be a crowd-pleaser. Perfect for the festive season, their glorious color and creamy center evoke the joy of holiday gatherings. Plus, the combination of soft, chewy edges with a tangy filling makes them a delightful indulgence that doesn’t require hours in the kitchen. Whether you’re planning a cookie exchange or simply want to treat yourself and loved ones, these cookies are an elegant touch that will surely brighten any occasion. Ready to impress with your baking skills? Let’s dive into this delicious recipe!

Why Are These Cookies a Must-Make?
Decadent Richness: Each bite of these Red Velvet Thumbprint Cookies offers an indulgent taste experience, thanks to the creamy, cheesecake-like filling that complements the vibrant cookie base.
Festive Charm: Perfect for holiday gatherings, their striking red color and elegant appearance make them a delightful addition to any cookie platter.
Easy to Bake: With straightforward instructions, even beginner bakers will shine in the kitchen. Plus, the use of simple ingredients like butter, flour, and cream cheese makes it accessible.
Cheerful Texture: Expect a soft, pillowy cookie with slightly chewy edges, creating an irresistible combination that keeps everyone coming back for more.
Gift-Worthy Goodness: These cookies can be easily wrapped and gifted, making them an excellent choice for cookie exchanges or thoughtful presents for friends and family.
For more tasty cookie ideas, check out my recipes for Cinnamon Roll Cookies, or if you’re in the mood for something sweet and festive, try these Pumpkin Cookies Soft.
Red Velvet Thumbprint Cookies Ingredients
• For those eager to bake these delightful cookies!
For the Cookie Dough
- Butter – Adds richness and moisture; use unsalted for better control of saltiness.
- Brown Sugar – Provides sweetness and a hint of caramel flavor; can substitute with white sugar but will lose some depth.
- Salt – Enhances sweetness and balances flavors; essential, so don’t skip it!
- Egg Yolks – Act as a binder for the dough, adding richness; substitute with ground flaxseed mixed with water for a vegan version.
- Vanilla Extract – Adds warmth and a delicious aroma; pure extract is preferred for best results.
- All-Purpose Flour – Provides structure to the cookies; for a gluten-free option, use a 1:1 gluten-free flour blend.
- Food Coloring (Red) – Gives the cookies their distinctive red hue; optional for a less vibrant color.
- Unsweetened Cocoa Powder – Contributes depth of flavor without adding sweetness; ensure it’s unsweetened.
- Granulated Sugar or Sugar Sprinkles – Adds sweetness and a festive touch when rolled on the cookie dough.
For the Cream Cheese Filling
- Cream Cheese – Forms the tasty filling that defines these cookies; can substitute with mascarpone or a vegan cream cheese.
- Additional Egg Yolk – Adds richness to the filling; same substitution applies as in the dough.
- Granulated Sugar – Sweetens the filling; use powdered sugar for a smoother texture.
- Salt – Balances the sweetness in the filling; don’t omit this key ingredient.
- Vanilla Extract – Enhances the flavor profile of the filling; can be omitted if preferred.
Dive into the world of baking and whip up these scrumptious Red Velvet Thumbprint Cookies with Cream Cheese filling!
Step‑by‑Step Instructions for Red Velvet Thumbprint Cookies with Cream Cheese
Step 1: Prepare the Dough
In a mixing bowl, whisk together 2 cups of all-purpose flour, 2 tablespoons of unsweetened cocoa powder, and a pinch of salt until well combined. In another bowl, beat 1 cup of unsalted butter, 1 cup of brown sugar, 2 egg yolks, and 1 teaspoon of vanilla extract until light and fluffy, about 4-5 minutes. Gradually add the dry ingredients to the wet mixture along with a few drops of red food coloring until a soft dough forms.
Step 2: Chill the Dough
Shape the soft dough into a log about 1-2 inches in diameter. Wrap it tightly in plastic wrap and chill in the refrigerator for at least 30 minutes, or until firm. Chilling allows the flavors to meld and helps prevent the cookies from spreading too much in the oven when you bake the Red Velvet Thumbprint Cookies.
Step 3: Preheat the Oven
While the dough chills, preheat your oven to 300°F (150°C) and line a baking sheet with parchment paper. This temperature will ensure a gentle bake, allowing the cookies to become fluffy with nicely set edges. Having the baking sheet ready will streamline the process when it’s time to bake the cookies.
Step 4: Shape the Cookies
Once chilled, remove the dough from the fridge and slice it into tablespoon-sized pieces. Roll each piece into a ball, then roll them in granulated sugar for a festive touch. Place the dough balls on the prepared baking sheet with a little space between each cookie, then use the back of a teaspoon to create an indentation in the center.
Step 5: Bake the Cookies
Bake the shaped cookies in your preheated oven for about 10 minutes, until the edges are firm but the centers are still soft. While the cookies are baking, prepare the cream cheese filling by mixing together 8 ounces of softened cream cheese, 1 egg yolk, 1/4 cup of granulated sugar, a pinch of salt, and 1 teaspoon of vanilla extract until it’s smooth and creamy.
Step 6: Add the Filling
After the initial baking time, remove the cookies from the oven, then carefully deepen the indentations with the teaspoon. Spoon the cream cheese filling into each indentation, filling them generously. Return the cookies to the oven and bake for an additional 12 minutes, watching for the filling to set slightly and become creamy.
Step 7: Cool the Cookies
Once baked, let the Red Velvet Thumbprint Cookies cool on the baking sheet for about 5 minutes. Then, gently transfer them to a wire rack to cool completely. This cooling step is important to maintain the cookie structure and allow the cream cheese filling to firm up a little more.

What to Serve with Red Velvet Thumbprint Cookies with Cream Cheese
Indulge in a complete holiday experience while enjoying these delightful cookies alongside complementary dishes that enhance their festive spirit.
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Creamy Mashed Potatoes: Their velvety texture combines beautifully with the fluffy cookies, creating a comforting contrast that warms the soul.
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Fresh Fruit Salad: The sweetness of seasonal fruits adds a bright, refreshing balance to the richness of the cookies, making each bite feel light.
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Hot Chocolate Bar: Serve with an array of toppings like whipped cream and marshmallows for a cozy, nostalgic pairing that highlights holiday cheer.
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Candied Pecans: The crunch and caramel-like sweetness amplify the flavors in the cookies, offering an enjoyable textural contrast with every mouthful.
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Cheese Platter: Include soft cheeses like brie or goat cheese; their creaminess echoes the cookies’ filling while providing a sophisticated touch to your dessert table.
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Vanilla Ice Cream: A scoop of creamy vanilla on the side complements the rich flavors of the cookies, creating a delightful duo that’s hard to resist.
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Gingerbread Lattes: The warm spices in your latte enhance the holiday vibes and provide the perfect beverage to sip alongside the cookies.
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Chocolate Covered Strawberries: These elegant bite-sized treats add not only a pop of color but also a sweet and slightly tart element that pairs wonderfully with the cookies.
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Spiced Eggnog: The rich and creamy texture of eggnog adds a festive flair while perfectly complementing the tangy cream cheese filling.
Expert Tips for Red Velvet Thumbprint Cookies
Perfect Butter Temperature: Use room temperature butter for easier mixing and a fluffier dough. Cold butter can lead to dense cookies.
Don’t Skip Chilling: Always chill the dough before baking. This helps maintain the cookie shape and prevents them from spreading too much in the oven.
Filling Watch: When adding the cream cheese filling, be careful not to overfill; it can spill over while baking, creating a messy appearance.
Even Baking: Rotate the baking sheets halfway through to ensure all cookies bake evenly, especially if your oven has hot spots.
Cool Completely: Allow the cookies to cool completely on the wire rack. This ensures the filling firms up properly, creating that perfect cheesecake-like texture.
Make Ahead Options
These Red Velvet Thumbprint Cookies with Cream Cheese Filling are perfect for meal prep, allowing you to enjoy festive baking without the last-minute rush! You can prepare the dough up to 24 hours in advance by rolling it into a log, wrapping it in plastic, and refrigerating it. To maintain quality, ensure the dough is tightly wrapped to prevent it from drying out. Additionally, the cream cheese filling can be made and stored in an airtight container in the fridge for up to 3 days. When you’re ready to bake, simply slice the chilled dough, form the cookies, and add the filling before popping them into the oven for a freshly baked treat that’s just as delicious!
Red Velvet Thumbprint Cookies with Cream Cheese Variations
Feel creative and ready to make these festive cookies your own with these delightful twists!
- Natural Coloring: Substitute red food coloring with beet juice for a vibrant, natural hue. You’ll gain a delicious earthy flavor!
- Flavor Infusion: Add a splash of almond extract to the cream cheese filling for a nutty depth that pairs beautifully with the chocolate notes.
- Zesty Twist: Incorporate finely grated lemon zest into the filling for a refreshing citrus burst that brightens the rich flavors.
- Nutty Crunch: Fold in finely chopped pecans or walnuts to the cookie dough for a delightful texture contrast in every bite.
- Healthier Sweetener: Try using coconut sugar instead of brown sugar for a lower-glycemic alternative that adds a unique caramel flavor.
- Delightful Dips: Drizzle melted white chocolate over cooled cookies for an extra layer of sweetness and a more decadent presentation.
- Spicy Kick: Mix a pinch of cayenne or cinnamon into the cream cheese filling for a subtle, warming spice that elevates each cookie.
- Gluten-Free Delight: Swap the all-purpose flour for a gluten-free blend to make these cookies accessible for everyone without losing taste!
And if you’re looking for more delicious cookie inspiration, don’t forget to check out my recipes for Cottage Cheese Muffin and Cinnamon Roll Cookies. Happy baking!
How to Store and Freeze Red Velvet Thumbprint Cookies
Room Temperature: Store the cookies in an airtight container for up to 3 days. They will remain soft and delightful, perfect for enjoying at a moment’s notice.
Fridge: For longer freshness, keep the cookies in the fridge in a sealed container for up to a week. This preserves their texture and flavor while the cream cheese filling stays perfectly creamy.
Freezer: Freeze the cookies for up to 3 months. Place them in a single layer on a baking sheet to freeze until solid, then transfer to a freezer-safe bag or container.
Reheating: To enjoy your frozen Red Velvet Thumbprint Cookies, let them thaw in the fridge overnight, then bring to room temperature or warm in the microwave for a few seconds to soften the filling.

Red Velvet Thumbprint Cookies with Cream Cheese Recipe FAQs
What type of butter is best for these cookies?
I recommend using unsalted butter to have better control over the overall saltiness of the cookies. Room temperature butter is ideal as it mixes more easily, creating a fluffier dough.
How can I tell if my cream cheese is fresh?
Check for a smooth consistency without any lumps. If you notice any discoloration or a sour smell, it’s best to discard it and use fresh cream cheese for that delightful filling!
What’s the best way to store leftovers?
Store your Red Velvet Thumbprint Cookies in an airtight container at room temperature for up to 3 days. If you want to keep them fresh longer, place them in the fridge for up to a week. Just be sure to allow the filling to stay creamy and delightful.
How do I freeze these cookies?
Freezing is simple! Place the cookies in a single layer on a baking sheet and freeze until solid (about 1-2 hours). Then, transfer them to a freezer-safe bag or container. They’ll maintain their lovely flavor for up to 3 months. When you’re ready to indulge, thaw them in the fridge overnight, and let them come to room temperature before enjoying.
Are there any dietary considerations for these cookies?
Absolutely! If you’re looking to make these cookies vegan, substitute the egg yolks with ground flaxseed mixed with water (1 tablespoon flaxseed + 3 tablespoons water for each egg yolk). Additionally, explore using vegan cream cheese for the filling. Always check for allergens when serving to friends and family, especially with common ingredients like cream cheese and flour.
What should I do if my cookies spread too much?
If your cookies spread too much, it might be because the dough wasn’t chilled long enough. Make sure to chill the dough for at least 30 minutes before baking. If you encounter spreading despite this, it could help to ensure your butter is at the right temperature (not too soft) and use a reliable measuring cup for your flour to avoid excess moisture.

Delightful Red Velvet Thumbprint Cookies with Cream Cheese Filling
Ingredients
Equipment
Method
- Prepare the Dough: In a mixing bowl, whisk together the flour, cocoa powder, and salt. In another bowl, beat the butter, brown sugar, egg yolks, and vanilla until light and fluffy. Gradually add dry ingredients and food coloring until a soft dough forms.
- Chill the Dough: Shape the dough into a log, wrap in plastic wrap, and chill in the refrigerator for at least 30 minutes.
- Preheat the Oven: Preheat your oven to 300°F (150°C) and line a baking sheet with parchment paper.
- Shape the Cookies: Slice the chilled dough into tablespoon-sized pieces, roll into balls, roll in granulated sugar, and create indentations with a teaspoon.
- Bake the Cookies: Bake for about 10 minutes until edges are firm and centers remain soft. Prepare the cream cheese filling by mixing the cream cheese, additional egg yolk, sugar, salt, and vanilla until smooth.
- Add the Filling: Deepen the indentations and spoon the cream cheese filling into each cookie. Return to the oven for an additional 12 minutes.
- Cool the Cookies: Cool the cookies on the baking sheet for 5 minutes before transferring to a wire rack to cool completely.

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